Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs139425294 | chr2:17854922 | C/T | 1.52E-8 | 405 | 15.25 | 15.67 | 7.33 | KM Plot |
| LGG | rs139621983 | chr5:92754294 | AAAAT/A | 0.000226 | 401 | 14.9 | 17.47 | 19.62 | KM Plot |
| LGG | rs139819992 | chr16:76261891 | AAC/A | 7.07E-7 | 405 | 15.37 | 15.63 | 5.85 | KM Plot |
| LGG | rs139876220 | chr4:182356771 | G/C | 3.72E-6 | 403 | 14.57 | 17.23 | 5.3 | KM Plot |
| LGG | rs139890754 | chr7:56050828 | C/CA | 1.58E-10 | 406 | 15.32 | 15.93 | 7.8 | KM Plot |
| LGG | rs139907318 | chr9:83423494 | G/T | 3.22E-5 | 399 | 15.97 | 14.22 | 8.5 | KM Plot |
| LGG | rs140018600 | chr3:153677673 | C/CA | 0 | 404 | 15.15 | 17.07 | 0.23 | KM Plot |
| LGG | rs140032294 | chr17:48525490 | A/AGATGGTAG | 2.35E-5 | 402 | 15.17 | 17.67 | 14.12 | KM Plot |
| LGG | rs140724303 | chr14:20749619 | G/A | 2.22E-5 | 389 | 15.63 | 15.7 | 8.07 | KM Plot |
| LGG | rs1407943 | chr9:95459248 | T/C | 0.000148 | 407 | 15.17 | 17.7 | 7.12 | KM Plot |
| LGG | rs140960926 | chr4:84433601 | C/CTG | 1.22E-15 | 396 | 14.93 | 17.97 | 5.17 | KM Plot |
| LGG | rs141062920 | chr19:23557502 | G/A | 3.32E-6 | 407 | 15.32 | 15.22 | 7.8 | KM Plot |
| LGG | rs141086314 | chr7:64934089 | T/C | 9.18E-8 | 400 | 15.57 | 15.2 | 2.27 | KM Plot |
| LGG | rs141123612 | chr7:55990155 | TG/T | 1.62E-10 | 405 | 15.3 | 16.23 | 7.8 | KM Plot |
| LGG | rs141520572 | chr1:158997233 | AT/A | 2.84E-5 | 391 | 14.83 | 18.4 | 9.2 | KM Plot |